fastq_to_fasta
A template for creation of SeqAn3 apps, with a FASTQ to FASTA example app.
initialise_max_bin_kmers.hpp
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1// --------------------------------------------------------------------------------------------------
2// Copyright (c) 2006-2022, Knut Reinert & Freie Universität Berlin
3// Copyright (c) 2016-2022, Knut Reinert & MPI für molekulare Genetik
4// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
5// shipped with this file and also available at: https://github.com/seqan/raptor/blob/main/LICENSE.md
6// --------------------------------------------------------------------------------------------------
7
8#pragma once
9
10#include <robin_hood.h>
11
14
15namespace raptor::hibf
16{
17
18template <seqan3::data_layout data_layout_mode>
19size_t initialise_max_bin_kmers(robin_hood::unordered_flat_set<size_t> & kmers,
20 std::vector<int64_t> & ibf_positions,
21 std::vector<int64_t> & filename_indices,
22 lemon::ListDigraph::Node const & node,
23 build_data<data_layout_mode> & data,
24 build_arguments const & arguments);
25
26} // namespace raptor::hibf
Must be first include.
Definition: bin_prefixes.hpp:13
size_t initialise_max_bin_kmers(robin_hood::unordered_flat_set< size_t > &kmers, std::vector< int64_t > &ibf_positions, std::vector< int64_t > &filename_indices, lemon::ListDigraph::Node const &node, build_data< data_layout_mode > &data, build_arguments const &arguments)
Definition: initialise_max_bin_kmers.cpp:19