fastq_to_fasta
A template for creation of SeqAn3 apps, with a FASTQ to FASTA example app.
loop_over_children.hpp
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1// --------------------------------------------------------------------------------------------------
2// Copyright (c) 2006-2022, Knut Reinert & Freie Universität Berlin
3// Copyright (c) 2016-2022, Knut Reinert & MPI für molekulare Genetik
4// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
5// shipped with this file and also available at: https://github.com/seqan/raptor/blob/main/LICENSE.md
6// --------------------------------------------------------------------------------------------------
7
8#pragma once
9
10#include <robin_hood.h>
11
14
15namespace raptor::hibf
16{
17
18template <seqan3::data_layout data_layout_mode>
19void loop_over_children(robin_hood::unordered_flat_set<size_t> & parent_kmers,
20 seqan3::interleaved_bloom_filter<> & ibf,
21 std::vector<int64_t> & ibf_positions,
22 lemon::ListDigraph::Node const & current_node,
23 build_data<data_layout_mode> & data,
24 build_arguments const & arguments,
25 bool is_root);
26
27} // namespace raptor::hibf
Must be first include.
Definition: bin_prefixes.hpp:13
void loop_over_children(robin_hood::unordered_flat_set< size_t > &parent_kmers, seqan3::interleaved_bloom_filter<> &ibf, std::vector< int64_t > &ibf_positions, lemon::ListDigraph::Node const &current_node, build_data< data_layout_mode > &data, build_arguments const &arguments, bool is_root)
Definition: loop_over_children.cpp:20
seqan3::interleaved_bloom_filter< seqan3::data_layout::uncompressed > ibf
Definition: index.hpp:22