#include <raptor/argument_parsing/search_arguments.hpp>
◆ make_threshold_parameters()
◆ bin_path
std::vector<std::vector<std::string> > raptor::search_arguments::bin_path {} |
◆ cache_thresholds
bool raptor::search_arguments::cache_thresholds {false} |
◆ compressed
bool raptor::search_arguments::compressed {false} |
◆ errors
uint8_t raptor::search_arguments::errors {0} |
◆ fpr
double raptor::search_arguments::fpr {0.05} |
◆ index_file
std::filesystem::path raptor::search_arguments::index_file {} |
◆ is_hibf
bool raptor::search_arguments::is_hibf {false} |
◆ is_socks
bool raptor::search_arguments::is_socks {false} |
◆ out_file
std::filesystem::path raptor::search_arguments::out_file {"search.out"} |
◆ p_max
double raptor::search_arguments::p_max {0.15} |
◆ parts
uint8_t raptor::search_arguments::parts {1u} |
◆ pattern_size
uint64_t raptor::search_arguments::pattern_size {} |
◆ pattern_size_strong
◆ query_file
std::filesystem::path raptor::search_arguments::query_file {} |
◆ shape
seqan3::shape raptor::search_arguments::shape {seqan3::ungapped{20u}} |
◆ shape_size
uint8_t raptor::search_arguments::shape_size {shape.size()} |
◆ shape_weight
uint8_t raptor::search_arguments::shape_weight {shape.count()} |
◆ tau
double raptor::search_arguments::tau {0.9999} |
◆ threads
uint8_t raptor::search_arguments::threads {1u} |
◆ threshold
double raptor::search_arguments::threshold {std::numeric_limits<double>::quiet_NaN()} |
◆ window_size
uint32_t raptor::search_arguments::window_size {20u} |
◆ write_time
bool raptor::search_arguments::write_time {false} |
The documentation for this struct was generated from the following file: