13#include <seqan3/search/kmer_index/shape.hpp>
42 std::vector<std::vector<std::string>>
bin_path{};
Definition: adjust_seed.hpp:13
Definition: build_arguments.hpp:21
bool is_socks
Definition: build_arguments.hpp:45
uint8_t kmer_size
Definition: build_arguments.hpp:23
bool compute_minimiser
Definition: build_arguments.hpp:28
bool compressed
Definition: build_arguments.hpp:39
std::string size
Definition: build_arguments.hpp:33
uint8_t parts
Definition: build_arguments.hpp:37
std::filesystem::path bin_file
Definition: build_arguments.hpp:43
uint64_t hash
Definition: build_arguments.hpp:36
bool is_minimiser
Definition: build_arguments.hpp:47
uint64_t bits
Definition: build_arguments.hpp:35
window window_size_strong
Definition: build_arguments.hpp:25
seqan3::shape shape
Definition: build_arguments.hpp:27
bool disable_cutoffs
Definition: build_arguments.hpp:29
uint8_t threads
Definition: build_arguments.hpp:44
std::vector< std::vector< std::string > > bin_path
Definition: build_arguments.hpp:42
std::string shape_string
Definition: build_arguments.hpp:26
std::filesystem::path out_path
Definition: build_arguments.hpp:32
double fpr
Definition: build_arguments.hpp:38
uint64_t bins
Definition: build_arguments.hpp:34
bool is_hibf
Definition: build_arguments.hpp:46
uint32_t window_size
Definition: build_arguments.hpp:24
Strong type for passing the window size.
Definition: strong_types.hpp:17