13#include <seqan3/search/kmer_index/shape.hpp>
30 std::vector<std::vector<std::string>>
bin_path{};
Definition: adjust_seed.hpp:13
Definition: upgrade_arguments.hpp:19
uint8_t parts
Definition: upgrade_arguments.hpp:23
uint32_t window_size
Definition: upgrade_arguments.hpp:20
uint8_t kmer_size
Definition: upgrade_arguments.hpp:21
std::filesystem::path in_file
Definition: upgrade_arguments.hpp:27
std::vector< std::vector< std::string > > bin_path
Definition: upgrade_arguments.hpp:30
seqan3::shape shape
Definition: upgrade_arguments.hpp:22
std::filesystem::path out_file
Definition: upgrade_arguments.hpp:28
std::filesystem::path bin_file
Definition: upgrade_arguments.hpp:26
bool compressed
Definition: upgrade_arguments.hpp:24